3P5O date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EAM, EDO BindingDB enzyme
Primary referenceSuppression of inflammation by a synthetic histone mimic., Nicodeme E, Jeffrey KL, Schaefer U, Beinke S, Dewell S, Chung CW, Chandwani R, Marazzi I, Wilson P, Coste H, White J, Kirilovsky J, Rice CM, Lora JM, Prinjha RK, Lee K, Tarakhovsky A, Nature. 2010 Dec 23;468(7327):1119-23. Epub 2010 Nov 10. PMID:21068722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3p5o.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3P5O
  • CSU: Contacts of Structural Units for 3P5O
  • Structure Factors (302 Kb)
  • Retrieve 3P5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P5O from S2C, [Save to disk]
  • Re-refined 3p5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P5O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P5O, from MSDmotif at EBI
  • Fold representative 3p5o from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p5o] [3p5o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P5O: [BROMO ] by SMART
    • Other resources with information on 3P5O
  • Community annotation for 3P5O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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