3PH7	Lyase	date	Nov 03, 2010
title	Crystal Structure Of Plasmodium Vivax Putative Polyprenyl Pyrophosphate Synthase In Complex With Geranylgeranyl Dipho
authors	A.K.Wernimont, J.Dunford, J.Lew, Y.Zhao, I.Kozieradzki, D.Cossar, M.Schapiro, A.Bochkarev, C.H.Arrowsmith, C.Bountra, J.Weigelt, A.M.Edwards, R.Hui, J.D.Artz, Structural Genomics Consortium (
compound		source
Molecule: Farnesyl Pyrophosphate Synthase Chain: A, B, C, D Engineered: Yes		Organism_scientific: Plasmodium Vivax Organism_taxid: 5855 Gene: Pvx_092040 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: P15-Tev-Lic
symmetry	Space Group: P 21 21 21	R_factor 0.235 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.095 108.985 141.354 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	GRG	enzyme
note	3PH7 supersedes 3MYS
Gene	PVX
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Molecular characterization of a novel geranylgeranyl pyrophosphate synthase from Plasmodium parasites., Artz JD, Wernimont AK, Dunford JE, Schapira M, Dong A, Zhao Y, Lew J, Russell RG, Ebetino FH, Oppermann U, Hui R, J Biol Chem. 2010 Nov 17. PMID:21084289

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk] Biological Unit Coordinates (3ph7.pdb1.gz) 115 Kb Biological Unit Coordinates (3ph7.pdb2.gz) 103 Kb LPC: Ligand-Protein Contacts for 3PH7 CSU: Contacts of Structural Units for 3PH7 Structure Factors (1221 Kb) Retrieve 3PH7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PH7 from S2C, [Save to disk] Re-refined 3ph7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PH7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PH7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PH7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ph7_A] [3ph7_D] [3ph7_B] [3ph7_C] [3ph7] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3PH7

Community annotation for 3PH7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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