3PMM Hydrolase date Nov 17, 2010
title The Crystal Structure Of A Possible Member Of Gh105 Family F Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
authors K.Tan, C.Hatzos-Skintges, J.Bearden, A.Joachimiak, Midwest Cente Structural Genomics (Mcsg)
compound source
Molecule: Putative Cytoplasmic Protein
Chain: A
Synonym: Glycosyl Hydrolase
Engineered: Yes
 Organism_scientific: Klebsiella Pneumoniae Subsp. Pneumonia
Organism_taxid: 272620
Strain: Mgh 78578
Gene: Kpn78578_23540, Kpn_02389
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: I 4 2 2
R_factor 0.156 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.085 143.085 129.612 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FMT, IMD, MSE enzyme
Gene KPN78578 ; KPN
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3pmm.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 3PMM
  • CSU: Contacts of Structural Units for 3PMM
  • Structure Factors (2232 Kb)
  • Retrieve 3PMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PMM from S2C, [Save to disk]
  • Re-refined 3pmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PMM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PMM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pmm_A] [3pmm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PMM
  • Community annotation for 3PMM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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