3PSJ	Transcription	date	Dec 01, 2010
title	Crystal Structure Of The Spt6 Tandem Sh2 Domain From Sacchar Cerevisiae, Form Se-Spt6 (1247-1451)
authors	D.Close, C.P.Hill
compound		source
Molecule: Transcription Elongation Factor Spt6 Chain: A Fragment: Unp Residues 1247-1451 Synonym: Chromatin Elongation Factor Spt6 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Strain: S288c Gene: Cre2, G6169, Spt6, Ssn20, Ygr116w Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid
symmetry	Space Group: I 41 2 2	R_factor 0.207 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.247 98.247 131.927 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	MSE, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of the S. cerevisiae Spt6 core and C-terminal tandem SH2 domain., Close D, Johnson SJ, Sdano MA, McDonald SM, Robinson H, Formosa T, Hill CP, J Mol Biol. 2011 May 13;408(4):697-713. Epub 2011 Mar 17. PMID:21419780

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (3psj.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 3PSJ CSU: Contacts of Structural Units for 3PSJ Structure Factors (801 Kb) Retrieve 3PSJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PSJ from S2C, [Save to disk] Re-refined 3psj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PSJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PSJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PSJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3psj] [3psj_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PSJ: [SH2 ] by SMART

Other resources with information on 3PSJ

Community annotation for 3PSJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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