3Q4C Transferase Transferase Inhibitor date Dec 23, 2010
title Crystal Structure Of Wild Type Braf Kinase Domain In Complex Organometallic Inhibitor Cns292
authors P.Xie, C.Streu, J.Qin, H.Pregman, N.Pagano, E.Meggers, R.Marmorste
compound source
Molecule: Serinethreonine-Protein Kinase B-Raf
Chain: A, B
Synonym: Proto-Oncogene B-Raf, P94, V-Raf Murine Sarcoma Vi Oncogene Homolog B1;
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Pfacstbac
symmetry Space Group: P 41 21 2
R_factor 0.232 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.905 94.905 163.349 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand RSW enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of BRAF in complex with an organoruthenium inhibitor reveals a mechanism for inhibition of an active form of BRAF kinase., Xie P, Streu C, Qin J, Bregman H, Pagano N, Meggers E, Marmorstein R, Biochemistry. 2009 Jun 16;48(23):5187-98. PMID:19371126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3q4c.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3q4c.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3Q4C
  • CSU: Contacts of Structural Units for 3Q4C
  • Structure Factors (320 Kb)
  • Retrieve 3Q4C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q4C from S2C, [Save to disk]
  • Re-refined 3q4c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3Q4C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3Q4C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q4C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q4c_B] [3q4c_A] [3q4c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q4C: [STYKc ] by SMART
    • Other resources with information on 3Q4C
  • Community annotation for 3Q4C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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