3QBX Transferase date Jan 14, 2011
title Crystal Structure Of Pseudomonas Aeruginosa 1,6-Anhydro-N- Actetylmuramic Acid Kinase (Anmk) Bound To 1,6-Anhydro-N- Actetylmuramic Acid
authors J.P.Bacik, D.R.Martin, B.L.Mark
compound source
Molecule: Anhydro-N-Acetylmuramic Acid Kinase
Chain: A, B
Synonym: Anhmurnac Kinase
Ec: 2.7.1.1
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Anmk, Pa0666
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor 0.193 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.480 91.480 173.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand AH0, SO4 enzyme Transferase E.C.2.7.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular Basis of 1,6-Anhydro Bond Cleavage and Phosphoryl Transfer by Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase., Bacik JP, Whitworth GE, Stubbs KA, Yadav AK, Martin DR, Bailey-Elkin BA, Vocadlo DJ, Mark BL, J Biol Chem. 2011 Apr 8;286(14):12283-91. Epub 2011 Feb 2. PMID:21288904
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3qbx.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 3QBX
  • CSU: Contacts of Structural Units for 3QBX
  • Structure Factors (746 Kb)
  • Retrieve 3QBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QBX from S2C, [Save to disk]
  • Re-refined 3qbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QBX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QBX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qbx_B] [3qbx] [3qbx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3QBX
  • Community annotation for 3QBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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