3QUT Hydrolase date Feb 24, 2011
title Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp13asn Mutant, An Open Cap Conformation
authors Y.Patskovsky, H.Huang, R.Toro, J.A.Gerlt, S.K.Burley, D.Dunaway-M S.C.Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc), Enzyme Function Initiative (Efi)
compound source
Molecule: Inorganic Pyrophosphatase
Chain: A
Synonym: Putative Beta-Phosphoglucomutase
Ec: 3.6.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818
Gene: Bt_2127
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.145 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.475 65.405 76.168 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, MG, MLT enzyme Hydrolase E.C.3.6.1.1 BRENDA
Gene BT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDivergence of structure and function in the haloacid dehalogenase enzyme superfamily: Bacteroides thetaiotaomicron BT2127 is an inorganic pyrophosphatase., Huang H, Patskovsky Y, Toro R, Farelli JD, Pandya C, Almo SC, Allen KN, Dunaway-Mariano D, Biochemistry. 2011 Oct 18;50(41):8937-49. Epub 2011 Sep 21. PMID:21894910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3qut.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3QUT
  • CSU: Contacts of Structural Units for 3QUT
  • Structure Factors (334 Kb)
  • Retrieve 3QUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QUT from S2C, [Save to disk]
  • Re-refined 3qut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QUT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QUT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qut_A] [3qut]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QUT
  • Community annotation for 3QUT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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