3RGQ	Hydrolase	date	Apr 08, 2011
title	Crystal Structure Of Ptpmt1 In Complex With Pi(5)P
authors	J.Xiao, J.L.Engel
compound		source
Molecule: Protein-Tyrosine Phosphatase Mitochondrial 1 Chain: A Synonym: Pten-Like Phosphatase, Phosphoinositide Lipid Phos Ec: 3.1.3.16, 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Plip, Ptpmt1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: C 1 2 1	R_factor 0.173 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.019 67.914 32.088 90.00 96.56 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	5P5	enzyme	Hydrolase E.C.3.1.3.16 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and functional analysis of PTPMT1, a phosphatase required for cardiolipin synthesis., Xiao J, Engel JL, Zhang J, Chen MJ, Manning G, Dixon JE, Proc Natl Acad Sci U S A. 2011 Jul 5. PMID:21730175

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (3rgq.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 3RGQ CSU: Contacts of Structural Units for 3RGQ Structure Factors (173 Kb) Retrieve 3RGQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RGQ from S2C, [Save to disk] Re-refined 3rgq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RGQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RGQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RGQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rgq] [3rgq_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3RGQ: [PTPc_DSPc ] by SMART

Other resources with information on 3RGQ

Community annotation for 3RGQ at PDBWiki (http://pdbwiki.org)

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