3RHG Hydrolase date Apr 11, 2011
title Crystal Structure Of Amidohydrolase Pmi1525 (Target Efi-5003 Proteus Mirabilis Hi4320
authors Y.Patskovsky, B.Hillerich, R.D.Seidel, W.D.Zencheck, R.Toro, H.J. F.M.Raushel, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (
compound source
Molecule: Putative Phophotriesterase
Chain: A
Engineered: Yes
 Organism_scientific: Proteus Mirabilis
Organism_taxid: 529507
Strain: Hi4320
Gene: Pmi1525
symmetry Space Group: P 32 2 1
R_factor 0.120 R_Free 0.156
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.203 101.203 65.614 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.53 Å
ligand BEZ, CAC, SO4, UNL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3rhg.pdb1.gz) 276 Kb
  • LPC: Ligand-Protein Contacts for 3RHG
  • CSU: Contacts of Structural Units for 3RHG
  • Structure Factors (408 Kb)
  • Retrieve 3RHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RHG from S2C, [Save to disk]
  • Re-refined 3rhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RHG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RHG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rhg_A] [3rhg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3RHG
  • Community annotation for 3RHG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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