3RIE The structure of Plasmodium falciparum spermidine synthase in complex with 5'-methylthioadenosine and N-(3-aminopropyl)-trans-cyclohexane-1,4-diamine date
authors Williams, M., Sprenger, J., Persson, L., Louw, A.I., Birkholtz, L., Al-Karadaghi, S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 1PG, GOL, JFQ, MTA BindingDB enzyme
Gene PF11
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceA novel inhibitor of Plasmodium falciparum spermidine synthase: a twist in the tail., Burger PB, Williams M, Sprenger J, Reeksting SB, Botha M, Muller IB, Joubert F, Birkholtz LM, Louw AI, Malar J. 2015 Feb 5;14(1):54. PMID:25651815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (3rie.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (3rie.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3RIE
  • CSU: Contacts of Structural Units for 3RIE
  • Structure Factors (3780 Kb)
  • Retrieve 3RIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RIE from S2C, [Save to disk]
  • Re-refined 3rie structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RIE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RIE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rie_A] [3rie] [3rie_C] [3rie_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3RIE
  • Community annotation for 3RIE at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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