3RLG	Hydrolase	date	Apr 19, 2011
title	Crystal Structure Of Loxosceles Intermedia Phospholipase D I H12a Mutant
authors	P.O.Giuseppe, A.Ullah, S.S.Veiga, M.T.Murakami, R.K.Arni
compound		source
Molecule: Sphingomyelin Phosphodiesterase D Lisictox-Alphai Chain: A Synonym: Dermonecrotic Protein 1, Lirecdt1, Sphingomyelin Phosphodiesterase D 1, Smd 1, Smase D 1, Sphingomyelinase D Ec: 3.1.4.41 Engineered: Yes Mutation: Yes		Organism_scientific: Loxosceles Intermedia Organism_common: Spider Organism_taxid: 58218 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-14b
symmetry	Space Group: P 1 21 1	R_factor 0.164 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.575 49.455 56.395 90.00 105.56 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	EDO, MG, PEG, PGE	enzyme	Hydrolase E.C.3.1.4.41 BRENDA
note	3RLG is a representative structure
Gene Ontology	Chain Function Process Component A toxin activity
Primary reference	Crystallization and preliminary X-ray diffraction analysis of a class II phospholipase D from Loxosceles intermedia venom., Ullah A, de Giuseppe PO, Murakami MT, Trevisan-Silva D, Wille AC, Chaves-Moreira D, Gremski LH, da Silveira RB, Sennf-Ribeiro A, Chaim OM, Veiga SS, Arni RK, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Feb 1;67(Pt, 2):234-6. Epub 2011 Jan 22. PMID:21301094

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3rlg.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 3RLG CSU: Contacts of Structural Units for 3RLG Structure Factors (495 Kb) Retrieve 3RLG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RLG from S2C, [Save to disk] Re-refined 3rlg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RLG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rlg] [3rlg_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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