3RTD	Lyase	date	May 03, 2011
title	Crystal Structure Of Tm0922, A Fusion Of A Domain Of Unknown And Adpatp-Dependent Nad(P)H-Hydrate Dehydratase From Ther Maritima Soaked With Nadh And Adp.
authors	I.A.Shumilin, M.Cymborowski, S.A.Lesley, W.Minor
compound		source
Molecule: Putative Uncharacterized Protein Chain: A Ec: 4.2.1.93 Engineered: Yes		Organism_scientific: Thermotoga Maritima Organism_taxid: 243274 Strain: Msb8 Gene: Tm0922, Tm_0922 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmh1
Molecule: Unknown Peptide, Probably From Expression Host Chain: B		Organism_scientific: Escherichia Coli Organism_taxid: 562 Other_details: Unknown Peptide, Probably From Expression Ho
symmetry	Space Group: I 4 2 2	R_factor 0.164 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.810 121.810 155.221 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ADP, K, MG, NAI, NAX	enzyme	Lyase E.C.4.2.1.93 BRENDA
Gene	TM
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of Unknown Protein Function Using Metabolite Cocktail Screening., Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W, Structure. 2012 Aug 28. PMID:22940582

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (3rtd.pdb1.gz) 1232 Kb LPC: Ligand-Protein Contacts for 3RTD CSU: Contacts of Structural Units for 3RTD Structure Factors (402 Kb) Retrieve 3RTD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RTD from S2C, [Save to disk] Re-refined 3rtd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RTD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RTD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RTD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rtd] [3rtd_A] [3rtd_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RTD

Community annotation for 3RTD at PDBWiki (http://pdbwiki.org)

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