3RVY Metal Transport date May 06, 2011
title Crystal Structure Of The Navab Voltage-Gated Sodium Channel (Ile217cys, 2.7 A)
authors J.Payandeh, T.Scheuer, N.Zheng, W.A.Catterall
compound source
Molecule: Ion Transport Protein
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Arcobacter Butzleri
Organism_taxid: 367737
Strain: Rm4018
Gene: Abu_1752
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_strain: Hi5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac Dual
symmetry Space Group: I 2 2 2
R_factor 0.266 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.594 125.483 192.297 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand PX4 enzyme
Gene ABU
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ion channel activity
  • cation channel activity


  • Primary referenceThe crystal structure of a voltage-gated sodium channel., Payandeh J, Scheuer T, Zheng N, Catterall WA, Nature. 2011 Jul 10;475(7356):353-8. doi: 10.1038/nature10238. PMID:21743477
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3rvy.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 3RVY
  • CSU: Contacts of Structural Units for 3RVY
  • Structure Factors (316 Kb)
  • Retrieve 3RVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RVY from S2C, [Save to disk]
  • Re-refined 3rvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rvy_A] [3rvy] [3rvy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RVY
  • Community annotation for 3RVY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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