3S8R Hydrolase date May 30, 2011
title Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid A Insight Into Autoproteolytic Activation
authors J.K.Kim, I.S.Yang, S.S.Park, K.H.Kim
compound source
Molecule: Glutaryl-7-Aminocephalosporanic-Acid Acylase
Chain: A, B
Synonym: Glutaryl-7-Aca Acylase, 7-Beta-(4-Carboxybutanamid Cephalosporanic Acid Acylase, Gl-7-Aca Acylase, Gca, Glutar Aminocephalosporanic-Acid Acylase Subunit Alpha, Glutaryl-7 Acylase Subunit Alpha, Glutaryl-7-Aminocephalosporanic-Acid Subunit Beta, Glutaryl-7-Aca Acylase Subunit Beta;
Ec: 3.5.1.93
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas
Organism_taxid: 269086
Strain: Sy-77-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23a
symmetry Space Group: C 1 2 1
R_factor 0.154 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
225.386 68.806 112.756 90.00 97.51 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL enzyme Hydrolase E.C.3.5.1.93 BRENDA
note 3S8R supersedes 1OQZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of glutaryl 7-aminocephalosporanic acid acylase: insight into autoproteolytic activation., Kim JK, Yang IS, Rhee S, Dauter Z, Lee YS, Park SS, Kim KH, Biochemistry. 2003 Apr 15;42(14):4084-93. PMID:12680762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (439 Kb) [Save to disk]
  • Biological Unit Coordinates (3s8r.pdb1.gz) 219 Kb
  • Biological Unit Coordinates (3s8r.pdb2.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 3S8R
  • CSU: Contacts of Structural Units for 3S8R
  • Structure Factors (935 Kb)
  • Retrieve 3S8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S8R from S2C, [Save to disk]
  • Re-refined 3s8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S8R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S8R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s8r_B] [3s8r_A] [3s8r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S8R
  • Community annotation for 3S8R at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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