3SD8 Dna date Jun 08, 2011
title Crystal Structure Of Ara-Fhna Decamer Dna
authors M.Egli, P.S.Pallan
compound source
Molecule: 5'-D(Gpcpgptpap(F4h)Papcpgpc)-3'
Chain: A, B
Engineered: Yes
Other_details: Ara-3'-Fluoro Hexitol (Ara-Fhna) Modified Dn
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.003 42.855 45.833 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand F4H, SR enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (3sd8.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 3SD8
  • CSU: Contacts of Structural Units for 3SD8
  • Structure Factors (40 Kb)
  • Retrieve 3SD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SD8 from S2C, [Save to disk]
  • Re-refined 3sd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SD8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SD8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sd8] [3sd8_B] [3sd8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3SD8
  • Community annotation for 3SD8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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