3SE2	Transferase	date	Jun 10, 2011
title	Human Poly(Adp-Ribose) Polymerase 14 (Parp14artd8) - Cataly In Complex With 6(5h)-Phenanthridinone
authors	T.Karlberg, P.Schutz, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Co A.M.Edwards, T.Ekblad, S.Graslund, E.Kouznetsova, M.Moche, P.Nor T.Nyman, A.G.Thorsell, L.Tresaugues, J.Weigelt, M.I.Siponen, H.S Structural Genomics Consortium (Sgc)
compound		source
Molecule: Poly [Adp-Ribose] Polymerase 14 Chain: A, B, C, D Fragment: Catalytic Domain Synonym: Parp-14, B Aggressive Lymphoma Protein 2 Ec: 2.4.2.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bal2, Kiaa1268, Parp14 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) R3 Prare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 65 2 2	R_factor 0.208 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.372 82.372 434.478 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	3AB, CL, GOL, LDR, SCN	enzyme	Transferase E.C.2.4.2.30 BRENDA
note	3SE2 is a representative structure
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Family-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors., Wahlberg E, Karlberg T, Kouznetsova E, Markova N, Macchiarulo A, Thorsell AG, Pol E, Frostell A, Ekblad T, Oncu D, Kull B, Robertson GM, Pellicciari R, Schuler H, Weigelt J, Nat Biotechnol. 2012 Feb 19. doi: 10.1038/nbt.2121. PMID:22343925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (3se2.pdb1.gz) 33 Kb Biological Unit Coordinates (3se2.pdb2.gz) 33 Kb Biological Unit Coordinates (3se2.pdb3.gz) 33 Kb Biological Unit Coordinates (3se2.pdb4.gz) 34 Kb Biological Unit Coordinates (3se2.pdb5.gz) 63 Kb Biological Unit Coordinates (3se2.pdb6.gz) 64 Kb LPC: Ligand-Protein Contacts for 3SE2 CSU: Contacts of Structural Units for 3SE2 Structure Factors (319 Kb) Retrieve 3SE2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SE2 from S2C, [Save to disk] Re-refined 3se2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SE2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SE2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SE2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1s3se2, region E:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1q3se2, region E:217-369 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3se2_D] [3se2] [3se2_C] [3se2_A] [3se2_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3SE2

Community annotation for 3SE2 at PDBWiki (http://pdbwiki.org)

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