3SFE Oxidoreductase date Jun 13, 2011
title Crystal Structure Of Porcine Mitochondrial Respiratory Compl Bound With Oxaloacetate And Thiabendazole
authors Q.J.Zhou, Y.J.Zhai, M.Liu, F.Sun
compound source
Molecule: Succinate Dehydrogenase [Ubiquinone] Flavoprotein Mitochondrial;
Chain: A
Synonym: Flavoprotein Subunit Of Complex II, Fp
Ec: 1.3.5.1
 Organism_scientific: Sus Scrofa
Organism_common: Pigs
Organism_taxid: 9823

Molecule: Succinate Dehydrogenase [Ubiquinone] Iron-Sulfur Mitochondrial;
Chain: B
Synonym: Iron-Sulf Protein, Iron-Sulfur Subunit Of Complex
Ec: 1.3.5.1
Organism_scientific: Sus Scrofa
Organism_common: Pigs
Organism_taxid: 9823

Molecule: Succinate Dehydrogenase Cytochrome B560 Subunit, Mitochondrial;
Chain: C
Synonym: Cytochrome B Binding Protein, Cybl, Succinate-Ubiq Oxidoreductase Cytochrome B Large Subunit;
Organism_scientific: Sus Scrofa
Organism_common: Pigs
Organism_taxid: 9823

Molecule: Succinate Dehydrogenase [Ubiquinone] Cytochrome B Subunit, Mitochondrial;
Chain: D
Fragment: Unp Residues 57-153
Synonym: Cytochrome B Binding Protein, Cybs, Cii-4, Qps3, S Dehydrogenase Complex Subunit D, Succinate-Ubiquinone Oxido Cytochrome B Small Subunit, Succinate-Ubiquinone Reductase Anchor Subunit
Organism_scientific: Sus Scrofa
Organism_common: Pigs
Organism_taxid: 9823
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.710 83.420 294.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand F3S, FAD, FES, HEM, OAA, SF4, TMG enzyme Oxidoreductase E.C.1.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A

  • mitochondrial respiratory ch...
    • B
  • electron transfer activity


    • C


    D


    Primary referenceThiabendazole inhibits ubiquinone reduction activity of mitochondrial respiratory complex II via a water molecule mediated binding feature., Zhou Q, Zhai Y, Lou J, Liu M, Pang X, Sun F, Protein Cell. 2011 Jul;2(7):531-42. Epub 2011 Aug 6. PMID:21822798
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (3sfe.pdb1.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 3SFE
  • CSU: Contacts of Structural Units for 3SFE
  • Structure Factors (942 Kb)
  • Retrieve 3SFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SFE from S2C, [Save to disk]
  • Re-refined 3sfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SFE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SFE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sfe_C] [3sfe] [3sfe_A] [3sfe_D] [3sfe_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3SFE
  • Community annotation for 3SFE at PDBWiki (http://pdbwiki.org)
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