3SJE Hydrolase Hydrolase Inhibitor date Jun 21, 2011
title X-Ray Structure Of Human Glutamate Carboxypeptidase II (The Inactive Mutant) In Complex With N-Acetyl-Aspartyl-Aminonon
authors A.Plechanovova, Y.Byun, G.Alquicer, L.Skultetyova, P.Mlcochova, A H.Kim, M.Navratil, R.Mease, J.Lubkowski, M.Pomper, J.Konvalinka, L.Rulisek, C.Barinka
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Synonym: Cell Growth-Inhibiting Gene 27 Protein, Folate Hyd Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Glutamate Carboxypeptidase II, Gcpii, Membrane Glutamate Carboxypepti Mgcp, N-Acetylated-Alpha-Linked Acidic Dipeptidase I, Naala Prostate-Specific Membrane Antigen, Psm, Psma, Pteroylpoly- Glutamate Carboxypeptidase;
Ec: 3.4.17.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Folh1, Folh, Naalad1, Psm, Psma, Gig27
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider'S S2 Cells
symmetry Space Group: I 2 2 2
R_factor 0.173 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.824 130.231 159.171 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BMA, CA, CL, MAN, NAG, SDR, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel substrate-based inhibitors of human glutamate carboxypeptidase II with enhanced lipophilicity., Plechanovova A, Byun Y, Alquicer G, Skultetyova L, Mlcochova P, Nemcova A, Kim HJ, Navratil M, Mease RC, Lubkowski J, Pomper MG, Konvalinka J, Rulisek L, Barinka C, J Med Chem. 2011 Sep 19. PMID:21923190
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (3sje.pdb1.gz) 495 Kb
  • LPC: Ligand-Protein Contacts for 3SJE
  • CSU: Contacts of Structural Units for 3SJE
  • Structure Factors (1712 Kb)
  • Retrieve 3SJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SJE from S2C, [Save to disk]
  • Re-refined 3sje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SJE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SJE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sje] [3sje_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SJE
  • Community annotation for 3SJE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science