3STD SCYTALONE DEHYDRATASE AND CYANOCINNOLINE INHIBITOR date
authors Chen, J.M., Xu, S.L., Wawrzak, Z., Basarab, G.S., Jordan, D.B.
compound source
symmetry
R_factor
R_Free 0.2300000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand CA, MQ0 BindingDB enzyme
related structures by homologous chain: 1IDP, 6STD
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure-based design of potent inhibitors of scytalone dehydratase: displacement of a water molecule from the active site., Chen JM, Xu SL, Wawrzak Z, Basarab GS, Jordan DB, Biochemistry 1998 Dec 22;37(51):17735-44. PMID:9922139
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3std.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3STD
  • CSU: Contacts of Structural Units for 3STD
  • Likely Quarternary Molecular Structure file(s) for 3STD
  • Retrieve 3STD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3STD from S2C, [Save to disk]
    • View 3STD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3STD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3STD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3stda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d3stdb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d3stdc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3std_B] [3std] [3std_C] [3std_A]
  • SWISS-PROT database: [P56221]
  • Domain organization of [SCYD_MAGGR] by SWISSPFAM
    • Other resources with information on 3STD
  • Community annotation for 3STD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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