3SV1 Protein Binding date Jul 12, 2011
title Crystal Structure Of App Peptide Bound Rat Mint2 Parm
authors Y.Shen, J.Long, X.Yan, X.Xie
compound source
Molecule: Amyloid Beta A4 Precursor Protein-Binding Family 2;
Chain: A, B, C
Fragment: Ptb And Arm Domains, Residues 365-552
Synonym: Adapter Protein X11beta, Neuron-Specific X11l Prot Neuronal Munc18-1-Interacting Protein 2, Mint-2;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Mint2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Amyloid Beta A4 Protein
Chain: D, E, F
Fragment: C-Terminal Peptide, Residues 754-767
Synonym: App
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: C 1 2 1
R_factor 0.243 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.119 52.092 121.282 90.00 127.80 90.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceOpen-closed motion of Mint2 regulates APP metabolism., Xie X, Yan X, Wang Z, Zhou H, Diao W, Zhou W, Long J, Shen Y, J Mol Cell Biol. 2012 Jun 21. PMID:22730553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3sv1.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (3sv1.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (3sv1.pdb3.gz) 24 Kb
  • CSU: Contacts of Structural Units for 3SV1
  • Structure Factors (166 Kb)
  • Retrieve 3SV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SV1 from S2C, [Save to disk]
  • Re-refined 3sv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SV1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SV1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sv1_A] [3sv1_C] [3sv1_D] [3sv1_B] [3sv1_E] [3sv1_F] [3sv1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SV1: [PTB ] by SMART
  • Other resources with information on 3SV1
  • Community annotation for 3SV1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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