3TDB Isomerase Inhibitor date Aug 10, 2011
title Human Pin1 Bound To Trans Peptidomimetic Inhibitor
authors M.Zhang, Y.Zhang
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: A
Fragment: Unp Residues 6-163
Synonym: Peptidyl-Prolyl Cis-Trans Isomerase Pin1, Ppiase P Rotamase Pin1;
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pin1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.217 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.273 69.273 79.657 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.27 Å
ligand 3TB, PE4 enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Kinetic Analysis of Prolyl-isomerization/Phosphorylation Cross-Talk in the CTD Code., Zhang M, Wang XJ, Chen X, Bowman ME, Luo Y, Noel JP, Ellington AD, Etzkorn FA, Zhang Y, ACS Chem Biol. 2012 Jun 18. PMID:22670809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3tdb.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3TDB
  • CSU: Contacts of Structural Units for 3TDB
  • Structure Factors (245 Kb)
  • Retrieve 3TDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TDB from S2C, [Save to disk]
  • Re-refined 3tdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TDB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TDB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tdb_A] [3tdb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TDB: [WW ] by SMART
    • Other resources with information on 3TDB
  • Community annotation for 3TDB at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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