3TG4	Transferase	date	Aug 17, 2011
title	Structure Of Smyd2 In Complex With Sam
authors	K.Zhao, L.Wang
compound		source
Molecule: N-Lysine Methyltransferase Smyd2 Chain: A Synonym: Hskm-B, Histone Methyltransferase Smyd2, Lysine N- Methyltransferase 3c, Set And Mynd Domain-Containing Protei Ec: 2.1.1.-, 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smyd2, Kmt3c Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.480 67.480 141.970 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	GOL, SAM, ZN	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A histone methyltransferase ac...
Primary reference	Structure of human SMYD2 reveals the basis of p53 tumor suppressor methylation., Wang L, Li L, Zhang H, Luo X, Dai J, Zhou S, Gu J, Zhu J, Atadja P, Lu C, Li E, Zhao K, J Biol Chem. 2011 Aug 31. PMID:21880715

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (3tg4.pdb1.gz) 152 Kb LPC: Ligand-Protein Contacts for 3TG4 CSU: Contacts of Structural Units for 3TG4 Structure Factors (1900 Kb) Retrieve 3TG4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TG4 from S2C, [Save to disk] Re-refined 3tg4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TG4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TG4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TG4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tg4_A] [3tg4] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3TG4: [SET ] by SMART

Other resources with information on 3TG4

Community annotation for 3TG4 at PDBWiki (http://pdbwiki.org)

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