3TGH Cell Invasion date Aug 17, 2011
title Gap50 The Anchor In The Inner Membrane Complex Of Plasmodium
authors J.Bosch, M.H.Paige, A.Vaidya, L.Bergman, W.G.J.Hol
compound source
Molecule: Glideosome-Associated Protein 50
Chain: A
Fragment: Unp Residues 24-365
Ec: 3.1.3.2
Engineered: Yes
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: 3d7
Gene: Gap50, Pfi0880c
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: T7
Expression_system_plasmid: Prsf1b
symmetry Space Group: P 32 2 1
R_factor 0.173 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.648 57.648 210.625 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand CO, DMS, SO4 enzyme Hydrolase E.C.3.1.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of GAP50, the anchor of the invasion machinery in the inner membrane complex of Plasmodium falciparum., Bosch J, Paige MH, Vaidya AB, Bergman LW, Hol WG, J Struct Biol. 2012 Apr;178(1):61-73. Epub 2012 Feb 22. PMID:22387043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (3tgh.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 3TGH
  • CSU: Contacts of Structural Units for 3TGH
  • Structure Factors (641 Kb)
  • Retrieve 3TGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TGH from S2C, [Save to disk]
  • Re-refined 3tgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TGH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TGH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tgh_A] [3tgh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TGH
  • Community annotation for 3TGH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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