OCA Atlas for 3TRZ

3TRZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GMP, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, D, B, C, F, A

Primary reference

Molecular Basis for Interaction of let-7 MicroRNAs with Lin28., Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P, Cell. 2011 Nov 23;147(5):1080-91. Epub 2011 Nov 10. PMID:22078496

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (370 Kb) [Save to disk]

Biological Unit Coordinates (3trz.pdb1.gz) 122 Kb

Biological Unit Coordinates (3trz.pdb2.gz) 122 Kb

Biological Unit Coordinates (3trz.pdb3.gz) 122 Kb

LPC: Ligand-Protein Contacts for 3TRZ

CSU: Contacts of Structural Units for 3TRZ

Structure Factors (2188 Kb)

Retrieve 3TRZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3TRZ from S2C, [Save to disk]

Re-refined 3trz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TRZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3trz_U] [3trz_V] [3trz_W] [3trz_X] [3trz_Y] [3trz_Z] [3trz] [3trz_A] [3trz_B] [3trz_C] [3trz_D] [3trz_E] [3trz_F]

SWISS-PROT database:

Domains found in 3TRZ: [CSP] [ZnF_C2HC ] by SMART

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