3TTU Oxidoreductase date Sep 15, 2011
title Structure Of F413yh128n Double Variant Of E. Coli Kate
authors P.C.Loewen, V.Jha
compound source
Molecule: Catalase Hpii
Chain: A, B, C, D
Synonym: Catalase Kate, Hydroxyperoxidase II
Ec: 1.11.1.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: B1732, Jw1721, Kate
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Um255
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pks
symmetry Space Group: P 1 21 1
R_factor 0.144 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.620 132.960 122.670 90.00 109.39 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand HEM enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • catalase activity
  • peroxidase activity


  • Primary referenceMutation of Phe413 to Tyr in catalase KatE from Escherichia coli leads to side chain damage and main chain cleavage., Jha V, Donald LJ, Loewen PC, Arch Biochem Biophys. 2012 Sep 15;525(2):207-14. doi: 10.1016/j.abb.2011.11.022. , Epub 2011 Dec 8. PMID:22172685
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1013 Kb) [Save to disk]
  • Biological Unit Coordinates (3ttu.pdb1.gz) 1004 Kb
  • LPC: Ligand-Protein Contacts for 3TTU
  • CSU: Contacts of Structural Units for 3TTU
  • Structure Factors (2971 Kb)
  • Retrieve 3TTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TTU from S2C, [Save to disk]
  • Re-refined 3ttu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TTU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TTU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ttu_C] [3ttu_B] [3ttu_A] [3ttu_D] [3ttu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TTU: [Catalase ] by SMART
  • Other resources with information on 3TTU
  • Community annotation for 3TTU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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