3TV3 Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with Man9 date
authors Pejchal, R., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.1838
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.29
ligand AML, EPE, GOL, MAN, PCA enzyme
Primary referenceA Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield., Pejchal R, Doores KJ, Walker LM, Khayat R, Huang PS, Wang SK, Stanfield RL, Julien JP, Ramos A, Crispin M, Depetris R, Katpally U, Marozsan A, Cupo A, Maloveste S, Liu Y, McBride R, Ito Y, Sanders RW, Ogohara C, Paulson JC, Feizi T, Scanlan CN, Wong CH, Moore JP, Olson WC, Ward AB, Poignard P, Schief WR, Burton DR, Wilson IA, Science. 2011 Oct 13. PMID:21998254
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (3tv3.pdb1.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 3TV3
  • CSU: Contacts of Structural Units for 3TV3
  • Structure Factors (1220 Kb)
  • Retrieve 3TV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TV3 from S2C, [Save to disk]
  • Re-refined 3tv3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TV3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TV3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tv3] [3tv3_L] [3tv3_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3TV3: [IG_like] [IGv ] by SMART
    • Other resources with information on 3TV3
  • Community annotation for 3TV3 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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