3TWI Immune System date Sep 21, 2011
title Variable Lymphocyte Receptor Recognition Of The Immunodomina Glycoprotein Of Bacillus Anthracis Spores
authors R.N.Kirchdoerfer, B.R.Herrin, B.W.Han, C.L.Turnbough Jr., M.D.Co I.A.Wilson
compound source
Molecule: Bcla Protein
Chain: A, B, C
Fragment: C-Terminal Domain
Synonym: Spore Surface Glycoprotein Bcla
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Anthracis
Organism_common: Anthrax,Anthrax Bacterium
Organism_taxid: 1392
Gene: Bcla, Ba_1222, Gbaa_1222
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Variable Lymphocyte Receptor B
Chain: D, E, F
Fragment: Antigen-Binding Domain
Engineered: Yes

Organism_scientific: Petromyzon Marinus
Organism_common: Marine Lamprey
Organism_taxid: 7757
Gene: Vlr-B
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 2 2 2
R_factor 0.189 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.809 146.528 209.501 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand GOL enzyme
Genes BA, GBAA
Primary referenceVariable Lymphocyte Receptor Recognition of the Immunodominant Glycoprotein of Bacillus anthracis Spores., Kirchdoerfer RN, Herrin BR, Han BW, Turnbough CL Jr, Cooper MD, Wilson IA, Structure. 2012 Mar 7;20(3):479-86. PMID:22405006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (3twi.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 3TWI
  • CSU: Contacts of Structural Units for 3TWI
  • Structure Factors (501 Kb)
  • Retrieve 3TWI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TWI from S2C, [Save to disk]
  • Re-refined 3twi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TWI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TWI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TWI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3twi_C] [3twi_F] [3twi_B] [3twi_D] [3twi_A] [3twi_E] [3twi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3TWI: [LRR] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 3TWI
  • Community annotation for 3TWI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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