3U56	Rna Rna Binding Protein	date	Oct 11, 2011
title	Crystal Structure Of Mutant Ribosomal Protein T217v Tthl1 In With 80nt 23s Rna From Thermus Thermophilus
authors	A.G.Gabdulkhakov, N.A.Nevskaya, S.V.Nikonov
compound		source
Molecule: 50s Ribosomal Protein L1 Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Gene: Rpla, Rpl1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl11(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a-Pltthl1 T217v
Molecule: Rna (80-Mer) Chain: B Engineered: Yes Other_details: Fragment Of 23s Rrna		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl11(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc18rrnatth
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.690 75.410 85.880 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MG, MLI	enzyme
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (3u56.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 3U56 CSU: Contacts of Structural Units for 3U56 Structure Factors (218 Kb) Retrieve 3U56 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U56 from S2C, [Save to disk] Re-refined 3u56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U56 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U56

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U56, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u56_A] [3u56_B] [3u56] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3U56

Community annotation for 3U56 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---