3UA5 Oxidoreductase date Oct 21, 2011
title Crystal Structure Of P450 2b6 (Y226hk262r) In Complex With Molecules Of Amlodipine
authors M.B.Shah, C.D.Stout, J.R.Halpert
compound source
Molecule: Cytochrome P450 2b6
Chain: A, B
Synonym: Cypiib6, Cytochrome P450 Iib1
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2b6
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk
symmetry Space Group: P 21 21 21
R_factor 0.242 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.000 78.300 247.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 06X, HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational Adaptation of Human Cytochrome P450 2B6 and Rabbit Cytochrome P450 2B4 Revealed upon Binding Multiple Amlodipine Molecules., Shah MB, Wilderman PR, Pascual J, Zhang Q, Stout CD, Halpert JR, Biochemistry. 2012 Sep 4. PMID:22909231
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (3ua5.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (3ua5.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (3ua5.pdb3.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 3UA5
  • CSU: Contacts of Structural Units for 3UA5
  • Structure Factors (425 Kb)
  • Retrieve 3UA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UA5 from S2C, [Save to disk]
  • Re-refined 3ua5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UA5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UA5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ua5] [3ua5_A] [3ua5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UA5
  • Community annotation for 3UA5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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