3UFL Hydrolase Hydrolase Inhibitor date Nov 01, 2011
title Discovery Of Pyrrolidine-Based B-Secretase Inhibitors: Lead Advancement Through Conformational Design For Maintenance O Binding Efficiency
authors T.Allison, S.Munshi, S.M.Soisson
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 58-446
Synonym: Bace1, Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
symmetry Space Group: C 2 2 21
R_factor 0.212 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.668 127.642 76.846 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 508, GOL, SO4 BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of pyrrolidine-based beta-secretase inhibitors: Lead advancement through conformational design for maintenance of ligand binding efficiency., Stachel SJ, Steele TG, Petrocchi A, Haugabook SJ, McGaughey G, Katharine Holloway M, Allison T, Munshi S, Zuck P, Colussi D, Tugasheva K, Wolfe A, Graham SL, Vacca JP, Bioorg Med Chem Lett. 2012 Jan 1;22(1):240-4. Epub 2011 Nov 12. PMID:22130130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3ufl.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 3UFL
  • CSU: Contacts of Structural Units for 3UFL
  • Structure Factors (612 Kb)
  • Retrieve 3UFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UFL from S2C, [Save to disk]
  • Re-refined 3ufl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UFL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UFL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ufl] [3ufl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UFL
  • Community annotation for 3UFL at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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