3UHR Oxygen Storage, Oxygen Transport date Nov 03, 2011
title Hbi (L36f) Deoxy
authors Z.Ren, V.Srajer, J.E.Knapp, W.E.Royer Jr.
compound source
Molecule: Globin-1
Chain: A, B
Synonym: Dimeric Hemoglobin, Globin I, Hbi
Engineered: Yes
Mutation: Yes
Organism_scientific: Scapharca Inaequivalvis
Organism_common: Ark Clam
Organism_taxid: 6561
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: W3110laciq L8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcs-26
symmetry Space Group: C 2 2 21
R_factor 0.166 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.620 44.380 143.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCooperative macromolecular device revealed by meta-analysis of static and time-resolved structures., Ren Z, Srajer V, Knapp JE, Royer WE Jr, Proc Natl Acad Sci U S A. 2011 Dec 14. PMID:22171006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3uhr.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3UHR
  • CSU: Contacts of Structural Units for 3UHR
  • Structure Factors (183 Kb)
  • Retrieve 3UHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UHR from S2C, [Save to disk]
  • Re-refined 3uhr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UHR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UHR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uhr] [3uhr_A] [3uhr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UHR
  • Community annotation for 3UHR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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