3UIR Hydrolase Hydrolase Inhibitor date Nov 05, 2011
title Crystal Structure Of The Plasmin-Textilinin-1 Complex
authors L.W.Guddat, E.K.Millers, J.De Jersey, M.F.Lavin, P.M.Masci
compound source
Molecule: Plasmin Light Chain B
Chain: A, B
Synonym: Microplasmin
Ec: 3.4.21.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21

Molecule: Textilinin-1
Chain: C, D
Synonym: Txln-1
Engineered: Yes

Organism_scientific: Pseudonaja Textilis Textilis
Organism_common: Eastern Brown Snake
Organism_taxid: 169397
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.901 48.019 82.627 90.00 102.08 90.00
method X-Ray Diffractionresolution 2.78 Å
ligand SO4 enzyme Hydrolase E.C.3.4.21.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C
  • serine-type endopeptidase in...


  • Primary referenceThe structure of human microplasmin in complex with textilinin-1, an aprotinin-like inhibitor from the Australian brown snake., Millers EK, Johnson LA, Birrell GW, Masci PP, Lavin MF, de Jersey J, Guddat LW, PLoS One. 2013;8(1):e54104. doi: 10.1371/journal.pone.0054104. Epub 2013 Jan 15. PMID:23335990
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (3uir.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3uir.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3UIR
  • CSU: Contacts of Structural Units for 3UIR
  • Structure Factors (248 Kb)
  • Retrieve 3UIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UIR from S2C, [Save to disk]
  • Re-refined 3uir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UIR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UIR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uir_B] [3uir] [3uir_D] [3uir_A] [3uir_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UIR: [KU] [Tryp_SPc ] by SMART
  • Other resources with information on 3UIR
  • Community annotation for 3UIR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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