3UKB Dna date Nov 09, 2011
title R)-Cet-Bna Decamer Structure
authors P.S.Pallan, M.Egli
compound source
Molecule: Dna (5'-D(Gpcpgptpap(Rce)Papcpgpc)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.146 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.022 44.897 44.911 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand RCE enzyme
Primary referenceStructure and nuclease resistance of 2',4'-constrained 2'-O-methoxyethyl (cMOE) and 2'-O-ethyl (cEt) modified DNAs., Pallan PS, Allerson CR, Berdeja A, Seth PP, Swayze EE, Prakash TP, Egli M, Chem Commun (Camb). 2012 May 22. PMID:22614180
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3ukb.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3UKB
  • CSU: Contacts of Structural Units for 3UKB
  • Structure Factors (133 Kb)
  • Retrieve 3UKB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UKB from S2C, [Save to disk]
  • Re-refined 3ukb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UKB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UKB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UKB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ukb_B] [3ukb_A] [3ukb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UKB
  • Community annotation for 3UKB at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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