3ULI	Transferase Transferase Inhibitor	date	Nov 10, 2011
title	Human Cyclin Dependent Kinase 2 (Cdk2) Bound To Azabenzimida Derivative
authors	N.A.Larsen, J.A.Tucker, T.Wang
compound		source
Molecule: Cyclin-Dependent Kinase 2 Chain: A Synonym: Cell Division Protein Kinase 2, P33 Protein Kinase Ec: 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Collection: 7108 Gene: Cdk2, Cdkn2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 21 21 21	R_factor 0.234 R_Free 0.303
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.304 71.352 71.914 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	1N3	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of azabenzimidazole derivatives as potent, selective inhibitors of TBK1/IKKepsilon kinases., Wang T, Block MA, Cowen S, Davies AM, Devereaux E, Gingipalli L, Johannes J, Larsen NA, Su Q, Tucker JA, Whitston D, Wu J, Zhang HJ, Zinda M, Chuaqui C, Bioorg Med Chem Lett. 2012 Mar 1;22(5):2063-9. doi: 10.1016/j.bmcl.2012.01.018., Epub 2012 Jan 14. PMID:22305584

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (3uli.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 3ULI CSU: Contacts of Structural Units for 3ULI Structure Factors (304 Kb) Retrieve 3ULI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ULI from S2C, [Save to disk] Re-refined 3uli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ULI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ULI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ULI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uli] [3uli_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ULI: [S_TKc ] by SMART

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