3UPQ	Transferase, Lyase Dna	date	Nov 18, 2011
title	Crystal Structure Of The Pre-Catalytic Ternary Complex Of Po Lambda With An Ratp Analog Opposite A Templating T.
authors	R.A.Gosavi, A.F.Moon, T.A.Kunkel, L.C.Pedersen, K.Bebenek
compound		source
Molecule: Dna Polymerase Lambda Chain: A Fragment: Loop Mutant Of Dna Polymerase Lambda Synonym: Pol Lambda, Dna Polymerase Beta-2, Pol Beta2, Dna Kappa; Ec: 2.7.7.7, 4.2.99.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Poll Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 5'-D(Cpgpgpcptpgptpapcptpg)-3' Chain: T Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Cpapgptpapc)-3' Chain: P Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Pgpcpcpg)-3' Chain: D Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.975 63.660 139.970 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	MN, NA, SO4, ZAN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The catalytic cycle for ribonucleotide incorporation by human DNA Pol lambda, Gosavi RA, Moon AF, Kunkel TA, Pedersen LC, Bebenek K, Nucleic Acids Res. 2012 May 14. PMID:22584622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (3upq.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 3UPQ CSU: Contacts of Structural Units for 3UPQ Structure Factors (283 Kb) Retrieve 3UPQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UPQ from S2C, [Save to disk] Re-refined 3upq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UPQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UPQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UPQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3upq_D] [3upq_P] [3upq_T] [3upq_A] [3upq] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3UPQ: [HhH1] [POLXc ] by SMART

Other resources with information on 3UPQ

Community annotation for 3UPQ at PDBWiki (http://pdbwiki.org)

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