3URO Viral Protein date Nov 22, 2011
title Poliovirus Receptor Cd155 D1d2
authors P.Zhang, S.Mueller, M.C.Morais, C.M.Bator, V.D.Bowman, S.Hafenste E.Wimmer, M.G.Rossmann
compound source
Molecule: Poliovirus Receptor
Chain: R
Fragment: Poliovirus Receptor Cd155 D1d2 (Unp Residues 29-2
Synonym: Nectin-Like Protein 5, Necl-5
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pvr, Pvs
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
symmetry Space Group: P 41 21 2
R_factor 0.305 R_Free 0.341
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.307 84.307 117.219 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
note 3URO supersedes 3EOW
Primary referenceCrystal structure of CD155 and electron microscopic studies of its complexes with polioviruses., Zhang P, Mueller S, Morais MC, Bator CM, Bowman VD, Hafenstein S, Wimmer E, Rossmann MG, Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18284-9. Epub 2008 Nov 14. PMID:19011098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3uro.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3uro.pdb2.gz) 68 Kb
  • CSU: Contacts of Structural Units for 3URO
  • Structure Factors (85 Kb)
  • Retrieve 3URO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3URO from S2C, [Save to disk]
  • Re-refined 3uro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3URO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3URO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3URO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uro] [3uro_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3URO: [IGv ] by SMART
    • Other resources with information on 3URO
  • Community annotation for 3URO at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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