3UYB Dna date Dec 06, 2011
title X-Ray Crystal Structure Of The Ruthenium Complex [Ru(Tap)2(D Bound To D(Tcggtaccga)
authors H.N.Niyazi, S.C.M.Texeira, E.P.Mitchell, J.C.Cardin, V.T.Forsyth
compound source
Molecule: 5'-D(Tpcpgpgptpapcpcpgpa)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.127 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.376 54.376 28.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand BA, RKL enzyme
note 3UYB supersedes 3UYA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (3uyb.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3UYB
  • CSU: Contacts of Structural Units for 3UYB
  • Structure Factors (53 Kb)
  • Retrieve 3UYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UYB from S2C, [Save to disk]
  • Re-refined 3uyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UYB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UYB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uyb_A] [3uyb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UYB
  • Community annotation for 3UYB at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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