3V30	Protein Binding	date	Dec 12, 2011
title	Crystal Structure Of The Peptide Bound Complex Of The Ankyri Domains Of Human Rfxank
authors	R.Lam, C.Xu, C.B.Bian, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmi A.M.Edwards, A.Bochkarev, J.Min, Structural Genomics Consortiu
compound		source
Molecule: Dna-Binding Protein Rfxank Chain: A Fragment: Unp Residues 90-260 (Ank Repeats) Synonym: Ankyrin Repeat Family A Protein 1, Regulatory Fact Subunit B, Rfx-B, Regulatory Factor X-Associated Ankyrin-Co Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ankra1, Rfxank, Rfxb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
Molecule: Dna-Binding Protein Rfx5 Chain: B Synonym: Regulatory Factor X 5 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Sequence Occurs Naturally In Human Rfx5
symmetry	Space Group: C 1 2 1	R_factor 0.164 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.804 31.499 63.079 90.00 107.53 90.00
method	X-Ray Diffraction	resolution	1.57 Å
Primary reference	Sequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock., Xu C, Jin J, Bian C, Lam R, Tian R, Weist R, You L, Nie J, Bochkarev A, Tempel W, Tan CS, Wasney GA, Vedadi M, Gish GD, Arrowsmith CH, Pawson T, Yang XJ, Min J, Sci Signal. 2012 May 29;5(226):ra39. PMID:22649097

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (3v30.pdb1.gz) 61 Kb CSU: Contacts of Structural Units for 3V30 Structure Factors (640 Kb) Retrieve 3V30 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V30 from S2C, [Save to disk] Re-refined 3v30 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V30 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V30

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V30, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v30_B] [3v30] [3v30_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V30: [ANK ] by SMART

Other resources with information on 3V30

Community annotation for 3V30 at PDBWiki (http://pdbwiki.org)

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