3V31	Protein Binding	date	Dec 12, 2011
title	Crystal Structure Of The Peptide Bound Complex Of The Ankyri Domains Of Human Ankra2
authors	R.Lam, C.Xu, C.B.Bian, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmi A.M.Edwards, A.Bochkarev, J.Min, Structural Genomics Consortiu
compound		source
Molecule: Ankyrin Repeat Family A Protein 2 Chain: A Fragment: Unp Residues 148-313 (Ank Repeats) Synonym: Rfxank-Like Protein 2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ankra, Ankra2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
Molecule: Histone Deacetylase 4 Chain: B Synonym: Hd4 Ec: 3.5.1.98 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Sequence Occurs Naturally In Human Hdac
symmetry	Space Group: P 1 21 1	R_factor 0.174 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 29.663 52.822 51.556 90.00 98.01 90.00
method	X-Ray Diffraction	resolution	1.57 Å
ligand	ACE, CL, NA	enzyme	Hydrolase E.C.3.5.1.98 BRENDA
Primary reference	Sequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock., Xu C, Jin J, Bian C, Lam R, Tian R, Weist R, You L, Nie J, Bochkarev A, Tempel W, Tan CS, Wasney GA, Vedadi M, Gish GD, Arrowsmith CH, Pawson T, Yang XJ, Min J, Sci Signal. 2012 May 29;5(226):ra39. PMID:22649097

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (3v31.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 3V31 CSU: Contacts of Structural Units for 3V31 Structure Factors (485 Kb) Retrieve 3V31 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V31 from S2C, [Save to disk] Re-refined 3v31 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V31 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V31

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V31, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v31] [3v31_B] [3v31_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V31: [ANK ] by SMART

Other resources with information on 3V31

Community annotation for 3V31 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---