3V50 Hydrolase Hydrolase Inhibitor date Dec 15, 2011
title Complex Of Shv S130g Mutant Beta-Lactamase Complexed To Sa2-
authors K.Wei, F.Van Den Akker
compound source
Molecule: Beta-Lactamase
Chain: A
Fragment: Shv-1 Beta-Lactamase
Synonym: Beta-Lactamase Shv-1, Beta-Lactamase Bla-Shv-1, Be Lactamase Blashv-1, Bla-Shv Type 1, Broad-Spectrum Beta-Lac Shv-1, Extended-Spectrum Beta-Lactamase Shv-11, Shv Type Be Lactamase, Shv Type Extended Spectrum Beta-Lactamase, Shv-1 Lactamase;
Ec: 3.5.2.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Blashv-1, Blactx-M, Blashv, Blashv-11, Blashv1, Shv, Shv-1, Shv-1b-A;
Expression_system: Escherichia Coli
Expression_system_taxid: 316385
Expression_system_strain: K-12 Substr.Dh10b
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbc Sk(-)
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.671 55.479 83.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MA4, SA2 enzyme Hydrolase E.C.3.5.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe importance of the trans-enamine intermediate as a beta-lactamase inhibition strategy probed in inhibitor-resistant SHV beta-lactamase variants., Ke W, Rodkey EA, Sampson JM, Skalweit MJ, Sheri A, Pagadala SR, Nottingham MD, Buynak JD, Bonomo RA, van den Akker F, ChemMedChem. 2012 Jun;7(6):1002-8. doi: 10.1002/cmdc.201200006. Epub 2012 Mar 21. PMID:22438274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3v50.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3V50
  • CSU: Contacts of Structural Units for 3V50
  • Structure Factors (578 Kb)
  • Retrieve 3V50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V50 from S2C, [Save to disk]
  • Re-refined 3v50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V50
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V50, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v50_A] [3v50]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V50
  • Community annotation for 3V50 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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