3V5U Metal Transport date Dec 16, 2011
title Structure Of Sodiumcalcium Exchanger From Methanocaldococcu Jannaschii Dsm 2661
authors Y.Jiang, J.Liao, H.Li, W.Zeng, D.Sauer, R.Belmares
compound source
Molecule: Uncharacterized Membrane Protein Mj0091
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 243232
Strain: Dsm 2661
Gene: Mj0091
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.490 72.879 96.206 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PE, ACT, CA, MYS, NA, OLC enzyme
note 3V5U is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium, potassium:sodium an...


    • Primary referenceStructural insight into the ion-exchange mechanism of the sodium/calcium exchanger., Liao J, Li H, Zeng W, Sauer DB, Belmares R, Jiang Y, Science. 2012 Feb 10;335(6069):686-90. PMID:22323814
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3v5u.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3V5U
  • CSU: Contacts of Structural Units for 3V5U
  • Structure Factors (273 Kb)
  • Retrieve 3V5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V5U from S2C, [Save to disk]
  • Re-refined 3v5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3V5U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V5U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v5u_A] [3v5u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3V5U
  • Community annotation for 3V5U at PDBWiki (http://pdbwiki.org)
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