3VBJ Transferase date Jan 02, 2012
title Crystal Structure Of Antd, An N-Acyltransferase From Bacillu In Complex With Dtdp And 3-Hydroxybutyryl-Coa
authors R.L.Kubiak, H.M.Holden
compound source
Molecule: Galactoside O-Acetyltransferase
Chain: A, C, E
Synonym: Antd
Ec: 2.3.1.18
Engineered: Yes
Organism_scientific: Bacillus Cereus
Organism_taxid: 699184
Strain: Sj1
Gene: Antd, Bcsj1_02085
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 41
R_factor 0.178 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.938 70.938 138.613 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 3HC, CL, TYD enzyme Transferase E.C.2.3.1.18 BRENDA
Gene BCSJ1
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


Primary referenceStructural Studies on AntD: an N-Acyltransferase Involved in the Biosynthesis of D-Anthrose., Kubiak RL, Holden HM, Biochemistry. 2012 Jan 4. PMID:22220494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3vbj.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3VBJ
  • CSU: Contacts of Structural Units for 3VBJ
  • Structure Factors (870 Kb)
  • Retrieve 3VBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VBJ from S2C, [Save to disk]
  • Re-refined 3vbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VBJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VBJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vbj_C] [3vbj_A] [3vbj_E] [3vbj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VBJ
  • Community annotation for 3VBJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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