3VHO Hydrolase date Aug 30, 2011
title Y61-Gg Insertion Mutant Of Tm-Cellulase 12a
authors Y.S.Cheng, T.P.Ko, R.T.Guo, J.R.Liu
compound source
Molecule: Endo-1,4-Beta-Glucanase
Chain: A, B
Synonym: Cellulase 12a
Ec: 3.2.1.4
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Cela
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.691 74.333 168.946 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand
enzyme Hydrolase E.C.3.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEnhanced activity of Thermotoga maritima cellulase 12A by mutating a unique surface loop., Cheng YS, Ko TP, Huang JW, Wu TH, Lin CY, Luo W, Li Q, Ma Y, Huang CH, Wang AH, Liu JR, Guo RT, Appl Microbiol Biotechnol. 2011 Dec 15. PMID:22170108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3vho.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3vho.pdb2.gz) 47 Kb
  • CSU: Contacts of Structural Units for 3VHO
  • Structure Factors (425 Kb)
  • Retrieve 3VHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VHO from S2C, [Save to disk]
  • Re-refined 3vho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VHO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VHO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vho_A] [3vho_B] [3vho]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VHO
  • Community annotation for 3VHO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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