3VMM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ADP, MG, P0D	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and enzymatic characterization of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis., Shomura Y, Hinokuchi E, Ikeda H, Senoo A, Takahashi Y, Saito JI, Komori H, Shibata N, Yonetani Y, Higuchi Y, Protein Sci. 2012 Mar 9. doi: 10.1002/pro.2058. PMID:22407814

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (3vmm.pdb1.gz) 160 Kb LPC: Ligand-Protein Contacts for 3VMM CSU: Contacts of Structural Units for 3VMM Structure Factors (333 Kb) Retrieve 3VMM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VMM from S2C, [Save to disk] Re-refined 3vmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VMM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vmm] [3vmm_A] SWISS-PROT database:

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