3VOR Cell Adhesion date Feb 06, 2012
title Crystal Structure Analysis Of The Cofa
authors S.Fukakusa, K.Kawahara, S.Nakamura, T.Iwasita, S.Baba, M.Nishimur Y.Kobayashi, T.Honda, T.Iida, T.Taniguchi, T.Ohkubo
compound source
Molecule: Cfaiii Pilin
Chain: A
Synonym: Cofa, Major Pilin Subunit
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: 260-1
Gene: Cofa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origamib(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32b
symmetry Space Group: P 1 21 1
R_factor 0.120 R_Free 0.130
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.820 47.710 42.450 90.00 107.52 90.00
method X-Ray Diffractionresolution 0.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing., Fukakusa S, Kawahara K, Nakamura S, Iwashita T, Baba S, Nishimura M, Kobayashi Y, Honda T, Iida T, Taniguchi T, Ohkubo T, Acta Crystallogr D Biol Crystallogr. 2012 Oct;68(Pt 10):1418-29. Epub 2012 Sep, 13. PMID:22993096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3vor.pdb1.gz) 100 Kb
  • CSU: Contacts of Structural Units for 3VOR
  • Structure Factors (841 Kb)
  • Retrieve 3VOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VOR from S2C, [Save to disk]
  • Re-refined 3vor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VOR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VOR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vor] [3vor_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VOR
  • Community annotation for 3VOR at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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