OCA Atlas for 3VQT

3VQT

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GDP

enzyme

Gene

DVMF

Gene
Ontology

Chain	Function	Process	Component
B, D, A, C

Primary reference

Crystal structure analysis of the translation factor RF3 (release factor 3)., Kihira K, Shimizu Y, Shomura Y, Shibata N, Kitamura M, Nakagawa A, Ueda T, Ochi K, Higuchi Y, FEBS Lett. 2012 Oct 19;586(20):3705-9. doi: 10.1016/j.febslet.2012.08.029. Epub, 2012 Sep 6. PMID:22975312

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (674 Kb) [Save to disk]

Biological Unit Coordinates (3vqt.pdb1.gz) 171 Kb

Biological Unit Coordinates (3vqt.pdb2.gz) 169 Kb

Biological Unit Coordinates (3vqt.pdb3.gz) 170 Kb

Biological Unit Coordinates (3vqt.pdb4.gz) 171 Kb

Biological Unit Coordinates (3vqt.pdb5.gz) 335 Kb

Biological Unit Coordinates (3vqt.pdb6.gz) 335 Kb

LPC: Ligand-Protein Contacts for 3VQT

CSU: Contacts of Structural Units for 3VQT

Structure Factors (2688 Kb)

Retrieve 3VQT in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3VQT from S2C, [Save to disk]

Re-refined 3vqt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VQT in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vqt] [3vqt_A] [3vqt_B] [3vqt_C] [3vqt_D]

SWISS-PROT database:

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