3VRZ	Transferase Transferase Inhibitor	date	Apr 21, 2012
title	Crystal Structure Of Hck Complexed With A Pyrrolo-Pyrimidine 1-[4-(4-Amino-7-Cyclopentyl-7h-Pyrrolo[2,3-D]Pyrimidin-5-Yl 3-Benzylurea
authors	M.Kuratani, Y.Tomabechi, N.Handa, S.Yokoyama
compound		source
Molecule: Tyrosine-Protein Kinase Hck Chain: A, B Fragment: Unp Residues 81-526 Synonym: Hematopoietic Cell Kinase, Hemopoietic Cell Kinase Hckp60-Hck, P59hck, P61hck; Ec: 2.7.10.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hck Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.239 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.645 96.492 180.864 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.22 Å
ligand	CA, CL, PTR, VRZ	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	A Pyrrolo-Pyrimidine Derivative Targets Human Primary AML Stem Cells in Vivo., Saito Y, Yuki H, Kuratani M, Hashizume Y, Takagi S, Honma T, Tanaka A, Shirouzu M, Mikuni J, Handa N, Ogahara I, Sone A, Najima Y, Tomabechi Y, Wakiyama M, Uchida N, Tomizawa-Murasawa M, Kaneko A, Tanaka S, Suzuki N, Kajita H, Aoki Y, Ohara O, Shultz LD, Fukami T, Goto T, Taniguchi S, Yokoyama S, Ishikawa F, Sci Transl Med. 2013 Apr 17;5(181):181ra52. doi: 10.1126/scitranslmed.3004387. PMID:23596204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk] Biological Unit Coordinates (3vrz.pdb1.gz) 73 Kb Biological Unit Coordinates (3vrz.pdb2.gz) 75 Kb LPC: Ligand-Protein Contacts for 3VRZ CSU: Contacts of Structural Units for 3VRZ Structure Factors (1059 Kb) Retrieve 3VRZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VRZ from S2C, [Save to disk] Re-refined 3vrz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VRZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VRZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VRZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vrz] [3vrz_B] [3vrz_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3VRZ: [SH2] [SH3] [TyrKc ] by SMART

Other resources with information on 3VRZ

Community annotation for 3VRZ at PDBWiki (http://pdbwiki.org)

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