3VTN Metal Binding Protein date Jun 01, 2012
title The Crystal Structure Of The C-Terminal Domain Of Mu Phage C Spike - Pt Derivative For Mad
authors K.Harada, E.Yamashita, A.Nakagawa, S.Takeda
compound source
Molecule: Protein Gp45
Chain: A
Fragment: Unp Residues 100-197
Engineered: Yes
 Organism_scientific: Enterobacteria Phage Mu
Organism_taxid: 10677
Gene: 45
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 3 2 1
R_factor 0.273 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.171 47.171 72.114 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand FE, PT enzyme
Primary referenceCrystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion., Harada K, Yamashita E, Nakagawa A, Miyafusa T, Tsumoto K, Ueno T, Toyama Y, Takeda S, Biochim Biophys Acta. 2013 Jan;1834(1):284-91. doi: 10.1016/j.bbapap.2012.08.015., Epub 2012 Aug 24. PMID:22922659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (3vtn.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3VTN
  • CSU: Contacts of Structural Units for 3VTN
  • Structure Factors (62 Kb)
  • Retrieve 3VTN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VTN from S2C, [Save to disk]
  • Re-refined 3vtn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VTN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VTN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VTN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vtn] [3vtn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VTN
  • Community annotation for 3VTN at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science