3W2R Transferase Transferase Inhibitor date Dec 03, 2012
title Egfr Kinase Domain T790ml858r Mutant With Compound 4
authors S.Sogabe, Y.Kawakita, S.Igaki
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Kinase Domain, Unp Residues 698-1022
Synonym: Proto-Oncogene C-Erbb-1, Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 43 21 2
R_factor 0.217 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.161 61.161 169.719 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand EDO, W2R enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3w2r.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3W2R
  • CSU: Contacts of Structural Units for 3W2R
  • Structure Factors (149 Kb)
  • Retrieve 3W2R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W2R from S2C, [Save to disk]
  • Re-refined 3w2r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W2R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W2R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W2R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w2r] [3w2r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W2R: [TyrKc ] by SMART
  • Other resources with information on 3W2R
  • Community annotation for 3W2R at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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