3WI8 Oxygen Transport date Sep 09, 2013
title Crystal Structure Of Horse Heart Myoglobin Reconstituted Wit Manganese Porphycene
authors E.Mizohata, K.Oohora, Y.Kihira, T.Inoue, T.Hayashi
compound source
Molecule: Myoglobin
Chain: A
 Organism_scientific: Equus Caballus
Organism_common: Domestic Horse,Equine
Organism_taxid: 9796
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.828 28.657 63.744 90.00 105.18 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand HNN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceC(sp3)-H bond hydroxylation catalyzed by myoglobin reconstituted with manganese porphycene., Oohora K, Kihira Y, Mizohata E, Inoue T, Hayashi T, J Am Chem Soc. 2013 Nov 20;135(46):17282-5. doi: 10.1021/ja409404k. Epub 2013 Nov, 7. PMID:24191678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3wi8.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3WI8
  • CSU: Contacts of Structural Units for 3WI8
  • Structure Factors (118 Kb)
  • Retrieve 3WI8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WI8 from S2C, [Save to disk]
  • Re-refined 3wi8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WI8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WI8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wi8_A] [3wi8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WI8
  • Community annotation for 3WI8 at PDBWiki (http://pdbwiki.org)

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